Search Genes/Transcripts by Id/Name
ALDBSSCT0000000589
| Item | Value | Item | Value |
|---|---|---|---|
| Transcript | ALDBSSCT0000000589 | Gene | ALDBSSCG0000000351 |
| Chromosome | 1 | Strand | - |
| Start | 547290 | End | 551934 |
| Length | 3860 | Exon number | 2 |
| Species | Sus scrofa | Source | ALDB |
| CNCI score | -1.33162 | CPC score | -1.02237 |
| Chromosome | Strand | Start | End |
|---|
| Query species | Query id | Query length | Subject species | Subject id | Subject length | Identity | Alignment length | E-value | Similarity |
|---|---|---|---|---|---|---|---|---|---|
| Sus scrofa | linc-ssct0313 | 3699 | Sus scrofa | ALDBSSCT0000000589 | 3860 | 100.00 | 3581 | 0.0 | Similar |
| Sus scrofa | linc-ssct0312 | 3732 | Sus scrofa | ALDBSSCT0000000589 | 3860 | 100.00 | 3581 | 0.0 | Similar |
Note: We blast these transcripts/genes against that of other species using NCBI Blastn with the parameters: -task megablast -evalue 1e-10 -max_target_seqs 100.
(i) Identical entries. These are entries with identical sequences and genomic locations.
(ii) Similar entries. These are entries with similar sequence information (query coverage>80%, subject coverage>80%, identity>0.8, e-value<1e-10).