ALDB: a domestic-animal long noncoding RNA database

Search Genes/Transcripts by Id/Name

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Examples:  ALDBSSCT0000011043ALDBBTAG0000000005ALDBSSCT0000000589.

ALDBBTAG0000000005

Item Value Item Value
Id ALDBBTAG0000000005 Name  
Chromosome 1 Strand +
Start 1825200 End 1900182
Species Bos taurus Source ALDB
View in GBrowse


Chart View of Expression Levels   Tissue-specific Expression

Study Tissue Individual Sample Expression(FPKM)
SRA059960 brain cow_a SRS369781 2.94296
SRA059960 brain cow_b SRS369790 0.499182
SRA059960 brain cow_c SRS369799 0.437855
SRA059960 colon cow_a SRS369782 0.00753504
SRA059960 colon cow_b SRS369791 0.112298
SRA059960 colon cow_c SRS369800 0.0
SRA059960 heart cow_a SRS369783 0.0
SRA059960 heart cow_b SRS369792 0.00481868
SRA059960 heart cow_c SRS369801 0.0167169
SRA059960 kidney cow_a SRS369784 0.00181934
SRA059960 kidney cow_b SRS369793 0.030614
SRA059960 kidney cow_c SRS369802 0.0342874
SRA059960 liver cow_a SRS369785 0.00868855
SRA059960 liver cow_b SRS369794 0.00902697
SRA059960 liver cow_c SRS369803 0.0192325
SRA059960 lung cow_a SRS369786 0.0
SRA059960 lung cow_b SRS369795 0.0118213
SRA059960 lung cow_c SRS369804 0.036414
SRA059960 skeletal muscle cow_a SRS369787 0.0
SRA059960 skeletal muscle cow_b SRS369796 0.0221315
SRA059960 skeletal muscle cow_c SRS369805 1.30293
SRA059960 spleen cow_a SRS369788 0.0
SRA059960 spleen cow_b SRS369797 0.0434361
SRA059960 spleen cow_c SRS369806 0.0109165
SRA059960 testes cow_a SRS369789 7.2864
SRA059960 testes cow_b SRS369798 6.90886
SRA059960 testes cow_c SRS369807 11.6912
Gene Id Gene Name Chr Strand Start End Biotype Expression GBrose
ENSBTAG00000019404 IL10RB NCBI Ensembl 1 - 1563137 1591758 protein_coding Expression GBrowse
ENSBTAG00000015212 IFNAR2 NCBI Ensembl 1 - 1593295 1627137 protein_coding Expression GBrowse
ENSBTAG00000047288   1 + 1675216 1675527 protein_coding Expression GBrowse
ENSBTAG00000037547 OLIG1 NCBI Ensembl 1 - 1776499 1777332 protein_coding Expression GBrowse
ALDBBTAG0000000151   1 - 1783925 1787090 lincRNA Expression GBrowse
ALDBBTAG0000000152   1 - 1844058 1900411 lincRNA Expression GBrowse
ALDBBTAG0000000006   1 + 1956529 1999324 lincRNA Expression GBrowse
ENSBTAG00000043993 BT.22629 NCBI Ensembl 1 + 2029406 2048813 protein_coding Expression GBrowse
ENSBTAG00000003064 BT.39483 NCBI Ensembl 1 + 2067036 2099875 protein_coding Expression GBrowse
ENSBTAG00000003063 BT.103203 NCBI Ensembl 1 + 2109219 2196114 protein_coding Expression GBrowse
QTL Id QTL Name
QTL0010630 Weaning weight-maternal milk
QTL0010631 Body weight (weaning)
QTL0010632 Marbling score (EBV)