About ALDB
Related Articles
Zhongyin Zhou, Aimin Li, AdeniyiC. Adeola, Yanhu Liu, DavidM. Irwin, Haibing Xie and Yaping Zhang: Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs. Genome Biology and Evolution. 2014, 6(6): 1387–1392.Aimin Li,Junying Zhang and Zhongyin Zhou: PLEK: A tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme. BMC bioinformatics 2014, 15:311.
Citation
If you make use of the data presented here, please cite the following article:Aimin Li, Junying Zhang, Zhongyin Zhou, Yujuan Liu and Yajun Liu: ALDB: a domestic-animal long noncoding RNA database. PloS One. 2015 Apr 8;10(4):e0124003. doi: 10.1371/journal.pone.0124003. eCollection 2015.
Data source we used/cited
| Raw Data | #Samples | #Tissues | Title | PubMed |
|---|---|---|---|---|
| ERA178851 | 20 | 10 | Pairwise comparisons of ten porcine tissues identify differential transcriptional regulation at the gene, isoform, promoter and transcription start site level | 23896602 |
| ERA209456 | 10 | 1 | A comparison of brain gene expression levels in domesticated and wild animals | 23028369 |
| SRA109352 | 10 | 1 | Identification of genes regulating growth and fatness traits in pig through hypothalamic transcriptome analysis | 23028369 |
| SRA065859 | 4 | 4 | Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars | 24162736 |
| SRA031272 | 6 | 3 | A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing | 21906321 |
| SRA065370 | 8 | 1 | Deep Sequencing of the Porcine Endometrial Transcriptome on Day 14 of Pregnancy 1 | 23426436 |
| SRA092777 | 4 | 1 | In Search of Epigenetic Marks in Testes and Sperm Cells of Differentially Fed Boars | 24223838 |
| SRA093372 | 8 | 1 | Transcriptome Changes in the Porcine Endometrium During the Pre-attachment Phase | 24174570 |
| SRA057367 | 3 | 3 | Analyses of pig genomes provide insight into porcine demography and evolution | 23151582 |
| SRA066357 | 20 | 2 | RNA Deep Sequencing Reveals Novel Candidate Genes and Polymorphisms in Boar Testis and Liver Tissues with Divergent Androstenone Levels | 23696805 |
| SRA064905 | 4 | 3 | The evolution of gene expression levels in mammalian organs | 22012392 |
| SRA059960 | 53 | 9 | Evolutionary dynamics of gene and isoform regulation in Mammalian tissues | 23258891 |
| SRA059267 | 5 | 5 | The evolutionary landscape of alternative splicing in vertebrate species | 23258890 |
Contact us
Aimin Li1 School of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China
2 School of Computer Science and Engineering, Xi'an University of Technology, Xi'an, 710048, PR China
Email: LiAiminMail@gmail.com
Junying ZhangSchool of Computer Science and Technology, Xidian University, Xi'an, 710071, PR China
Email: jyzhang@mail.xidian.edu.cn