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Pig (Sus scrofa) lincRNAs
Pig lincRNAs (on SS_10.2 in GFF3 format)
Pig lincRNAs (on SS_10.2 in GTF format)
Pig lincRNAs (in fasta format)
Pig lincRNAs (on SS_10.2 in GTF format)
[Identified by Zhou et al. Full Text (PDF)]
Chicken (Gallus gallus) lincRNAs
Chicken lincRNAs (on GG_4.0 in GFF3 format)
Chicken lincRNAs (on GG_4.0 in GTF format)
Chicken lincRNAs (in fasta format)
Cow (Bos taurus) lincRNAs
Cow lincRNAs (on UMD_3.1 in GFF3 format)
Cow lincRNAs (on UMD_3.1 in GTF format)
Cow lincRNAs (in fasta format)
Pig (Sus scrofa) expression
Pig FPKM expression levels, derived from ERA178851 using TopHat and Cufflinks
Pig count expression levels, derived from ERA178851 using SummaryOverlaps
Chicken (Gallus gallus) expression
Chicken FPKM expression levels, derived from SRA059960 using TopHat and Cufflinks
Chicken count expression levels, derived from SRA059960 using SummaryOverlaps
Cow (Bos taurus) expression
Cow FPKM expression levels, derived from SRA059960 using TopHat and Cufflinks
Cow count expression levels, derived from SRA059960 using SummaryOverlaps
CNCI of lincRNA transcripts
ALDB_pig_lincRNAs_with_CNCI
ALDB_chicken_lincRNAs_with_CNCI
ALDB_cow_lincRNAs_with_CNCI
Note
[1] Reference (CNCI):Sun L, Luo H, Bu D, Zhao G, Yu K, Zhang C, Liu Y, Chen R, Zhao Y: Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. Nucleic acids research 2013, 41(17):e166.
[2] How are the expression levels calculated? (link)