PigVar contains the following data sets

1. GATK SNP files

2. Samtools mpileup SNP files

3. Phased SNP files

4. SV files







Download the data for the article: Genotyping by sequencing reveals new loci for pig teat number
1. GATK SNP files
NOTES: FTP was stopped. Please download files at http://202.200.112.245/pigvar/files/
All these data can be downloaded from our server freely. Please use the following tools to do downloading since the data files are rather big.
Under linux environment:you may use wget, for example:
   wget ftp://www.ibiomedical.net/pub/pigvar/beagled_chr1.vcf.gz
Under windows environment: you may use FTP tool, (e.g.FileZilla):
    host: www.ibiomedical.net
    username: anonymous
    password: anonymous
   After you connect to the host successfully, change to the path /pub/pigvar/
   Please feel free to contact us if you encounter any problem.
File name File size Last modify time
gatk.UnifiedGenotyper.SME.SRP047260.vcf.tar.gz 24,177 MB July 16, 2016
gatk.unifiedgenotyper.recalibrated_95.0_filtered.pass_snp.vcf.gz43,339 MB Jun 14, 2015
outgroup_gatk.unifiedgenotyper.recalibrated_95.0_filtered.pass_snp.vcf.gz3,031 MB Jun 14, 2015