PigVar

Positive Selection

Examples:
dbSNP IDrs327167211 PigVar SNP IDSSCrs06000258946 Genomic Regionchr6:255611-256573 Gene NameMC1R

Type:
Query:
Low cutoff indicator line:	%
High cutoff indicator line:	%
Population:
Statistics:

ΔFilter & Quality Control (click to toggle)

The hard filtering used here is quite strict according to empirical cutoff estimation for different selective signals, in most of cases, your query will return no hit. You could remove some following filters by setting empty value!

*Frequency Filter*
Derived Allele Frequency (DAF):	> (0-1)
Genotype Frequency of Homozygous Derived Allele (GFHOM1):	> (0-1)
Genotype Frequency of Heterozygote (GFHET):	> (0-1)
*Genetic Filter*
P-value cutoff of Hardy-Weinberg equilibrium (HWE2):	> (0-1)
Heterozygosity (HET):	< (0-1)
Nucleotide Diversity (PI):	< (0-1)
*Positive Selection Signal Filter*
Difference of Derived Allele Frequency (\|DDAF\|):	> (0-1)
Tajima’s D (TD):	< (-10-10)
Fixation Index (F_ST):	> (0-1)
Integrated Haplotype Score (\|IHS\|):	> (0-3)
Cross-Population Extended Haplotype Homozygosity (\|XPEHH\|):	> (0-5)
Cross-Population Composite Likelihood Ratio (XPCLR):	> (0-200)
*Sorting Item*
Assign a statistical term for sorting:

THE PIG VARIATIONS AND POSITIVE SELECTION DATABASE