SNP: Search by SS#
| ss# | ss715651594 |
|---|---|
| loc_snp_id | WU_10.2_1_50557 |
| allele | A/C |
| samplesize | 40 |
| rs# | rs333851370 |
| ss2rs_orien | 0 |
| chr | 1 |
| chr_pos | 50557 |
| contig_acc | NW_003533882.2 |
| contig_pos | 50557 |
| rs2genome_orien | 0 |
| assembly | Sscrofa10.2 |
| weight | 1 |
| species | Sus scrofa |
| datasource | snpBatch_WU_ABGC_1059015 |
Column heading:
ss#: dbSNP id for submitted snp.
loc_snp_id: submitted defined snp identifier.
allele: submitted variation alleles.
samplesize: in number of chromosomes.
rs#: dbSNP id for refSNP cluster which consists of 1 or more submitted snps with same map location.
ss2rs_orien: 1 means that flanking sequence of submitted snp is in opposite strand of the refSNP flank.
chr: chromosome based on reference assembly.
chr_pos: chromosome position based on reference assembly.
contig_acc: reference contig accession and version
contig_pos: position on the contig
rs2genome_orien: snp maps to the opposite strand of the genome sequence.
assembly: NCBI reference if the snp hits it, otherwise, this shows the other assembly the snp hits.
weight: map weight on NCBI reference assembly if the snp hits it, otherwise, it is the weight on other assemblies.