SNP: Search by SS#
ss# | ss189126979 |
---|---|
loc_snp_id | crp2009_1_43469 |
allele | G/T |
samplesize | 176 |
rs# | rs316524980 |
ss2rs_orien | 0 |
chr | 1 |
chr_pos | 50118 |
contig_acc | NW_003763449.1 |
contig_pos | 11518 |
rs2genome_orien | 0 |
assembly | Gallus_gallus-4.0 |
weight | 1 |
species | Gallus gallus |
datasource | snpBatch_CFG-UPPSALA_1050036 |
Column heading:
ss#: dbSNP id for submitted snp.
loc_snp_id: submitted defined snp identifier.
allele: submitted variation alleles.
samplesize: in number of chromosomes.
rs#: dbSNP id for refSNP cluster which consists of 1 or more submitted snps with same map location.
ss2rs_orien: 1 means that flanking sequence of submitted snp is in opposite strand of the refSNP flank.
chr: chromosome based on reference assembly.
chr_pos: chromosome position based on reference assembly.
contig_acc: reference contig accession and version
contig_pos: position on the contig
rs2genome_orien: snp maps to the opposite strand of the genome sequence.
assembly: NCBI reference if the snp hits it, otherwise, this shows the other assembly the snp hits.
weight: map weight on NCBI reference assembly if the snp hits it, otherwise, it is the weight on other assemblies.