miRBond: Genome-scale identification of miRNA-mRNA and
miRNA-lncRNA interactions in domestic animals

BLAST sequence against pig/chicken/cow miRNAs

Basic Search - using default BLAST parameter settings

Enter sequence(s) below in FASTA format   

Set subsequence: From         To

Or load sequence file:
Program
Database

Advanced Search - setting your favorite parameters below

Expect threshold (evalue)
Max target sequences
Alignment output format
Filter Low complexity
Mask Mask for lookup table only
Alignment Perform ungapped alignment
Matrix
Query Genetic Codes (blastx only)
Database Genetic Codes (tblast[nx] only)
Frame shift penalty for blastx
Other advanced options

Graphical Overview   

Color schema DESCRIPTIONS

Reference

Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 , 3389-3402.