SNP Detail For rs999556
1.Mapping Information
Human SNP ID rs999556
Human chromosome chr5
Human SNP position 151094113
Pig chromosome chr16
Pig SNP position 78154434
2.Annotation Information
PubMed ID23049088
JournalInvest Ophthalmol Vis Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23049088
StudyA genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.
Disease/TraitMyopia (pathological)
Initial sample187 European ancestry cases, 1064 European ancestry controls
Replication sample
Region5q33.1
Chromosome idchr5
Chromosome position151094113
Reported geneintergenic
Mapped geneTNIP1 - ANXA6
Upstream gene id10318
Downstream gene id309
SNP gene ids
Upstream gene distance6453
Downstream gene distance6593
SNP risk allelers999556-?
SNPsrs999556
Merged0
SNP id current999556
Contextupstream_gene_variant
Intergenic1
Allele frequency0.2722
P value0.000000000000001
Pvalue mlog15
P value text
Or beta
%95 Ci[NR]
PlatformAffymetrix, Illumina [152234]
CNVN
Mapped traitpathological myopia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004207
Study accessionGCST001712