SNP Detail For rs9978142
1.Mapping Information
Human SNP ID rs9978142
Human chromosome chr21
Human SNP position 34279939
Pig chromosome chr13
Pig SNP position 207722367
2.Annotation Information
PubMed ID21946350
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21946350
StudyGenome-wide association and large-scale follow up identifies 16 new loci influencing lung function.
Disease/TraitPulmonary function
Initial sample48,201 European ancestry individuals
Replication sample46,411 European ancestry individuals
Region21q22.11
Chromosome idchr21
Chromosome position34279939
Reported geneKCNE2
Mapped geneLINC00310 - LOC105372791
Upstream gene id114036
Downstream gene id105372791
SNP gene ids
Upstream gene distance90020
Downstream gene distance73098
SNP risk allelers9978142-T
SNPsrs9978142
Merged0
SNP id current9978142
Contextintron_variant
Intergenic1
Allele frequency0.16
P value0.00000003
Pvalue mlog7.52287874528033
P value text(FEV1/FVC)
Or beta0.043
%95 Ci[0.027-0.059] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement, FEV/FEC ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST001248