Human SNP ID | rs9978142 |
---|---|
Human chromosome | chr21 |
Human SNP position | 34279939 |
Pig chromosome | chr13 |
Pig SNP position | 207722367 |
PubMed ID | 21946350 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21946350 |
Study | Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. |
Disease/Trait | Pulmonary function |
Initial sample | 48,201 European ancestry individuals |
Replication sample | 46,411 European ancestry individuals |
Region | 21q22.11 |
Chromosome id | chr21 |
Chromosome position | 34279939 |
Reported gene | KCNE2 |
Mapped gene | LINC00310 - LOC105372791 |
Upstream gene id | 114036 |
Downstream gene id | 105372791 |
SNP gene ids | |
Upstream gene distance | 90020 |
Downstream gene distance | 73098 |
SNP risk allele | rs9978142-T |
SNPs | rs9978142 |
Merged | 0 |
SNP id current | 9978142 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.16 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (FEV1/FVC) |
Or beta | 0.043 |
%95 Ci | [0.027-0.059] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement, FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001248 |