SNP Detail For rs9976946
1.Mapping Information
Human SNP ID rs9976946
Human chromosome chr21
Human SNP position 34835765
Pig chromosome chr13
Pig SNP position 208247307
2.Annotation Information
PubMed ID23551011
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23551011
StudyGenome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.
Disease/TraitPreeclampsia
Initial sample21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls
Replication sampleNA
Region21q22.12
Chromosome idchr21
Chromosome position34835765
Reported geneRUNX1
Mapped geneRUNX1
Upstream gene id
Downstream gene id
SNP gene ids861
Upstream gene distance
Downstream gene distance
SNP risk allelers9976946-?
SNPsrs9976946
Merged0
SNP id current9976946
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta5.5
%95 Ci[2.65-11.39]
PlatformIllumina [2485249] (imputed)
CNVN
Mapped traitpreeclampsia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000668
Study accessionGCST001949