SNP Detail For rs9975851
1.Mapping Information
Human SNP ID rs9975851
Human chromosome chr21
Human SNP position 26344335
Pig chromosome chr14
Pig SNP position 77183190
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region21q21.3
Chromosome idchr21
Chromosome position26344335
Reported geneCYYR1
Mapped geneMARCKSP1 - LOC105372811
Upstream gene id4083
Downstream gene id105372811
SNP gene ids
Upstream gene distance108421
Downstream gene distance50698
SNP risk allelers9975851-T
SNPsrs9975851
Merged0
SNP id current9975851
Contextintergenic_variant
Intergenic1
Allele frequency0.57
P value0.000004
Pvalue mlog5.39794000867203
P value text(No asthma)
Or beta1.17
%95 Ci[NR]
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621