Human SNP ID | rs9975851 |
---|---|
Human chromosome | chr21 |
Human SNP position | 26344335 |
Pig chromosome | chr14 |
Pig SNP position | 77183190 |
PubMed ID | 22837378 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22837378 |
Study | Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. |
Disease/Trait | Airflow obstruction |
Initial sample | up to 3,368 European ancestry cases, up to 29,507 European ancestry controls |
Replication sample | 331 European ancestry cases, 2,550 European ancestry controls |
Region | 21q21.3 |
Chromosome id | chr21 |
Chromosome position | 26344335 |
Reported gene | CYYR1 |
Mapped gene | MARCKSP1 - LOC105372811 |
Upstream gene id | 4083 |
Downstream gene id | 105372811 |
SNP gene ids | |
Upstream gene distance | 108421 |
Downstream gene distance | 50698 |
SNP risk allele | rs9975851-T |
SNPs | rs9975851 |
Merged | 0 |
SNP id current | 9975851 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (No asthma) |
Or beta | 1.17 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892 |
Study accession | GCST001621 |