SNP Detail For rs9970807
1.Mapping Information
Human SNP ID rs9970807
Human chromosome chr1
Human SNP position 56499992
Pig chromosome chr6
Pig SNP position 143728636
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region1p32.2
Chromosome idchr1
Chromosome position56499992
Reported genePPAP2B
Mapped genePPAP2B
Upstream gene id
Downstream gene id
SNP gene ids8613
Upstream gene distance
Downstream gene distance
SNP risk allelers9970807-C
SNPsrs9970807
Merged
SNP id current9970807
Contextintron_variant
Intergenic0
Allele frequency0.915097
P value0.00000000000005
Pvalue mlog13.3010299956639
P value text
Or beta1.13
%95 Ci[1.10- 1.17]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitMyocardial infarction
Initial sample27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3
Replication sampleNA
Region1p32.2
Chromosome idchr1
Chromosome position56499992
Reported genePPAP2B
Mapped genePPAP2B
Upstream gene id
Downstream gene id
SNP gene ids8613
Upstream gene distance
Downstream gene distance
SNP risk allelers9970807-C
SNPsrs9970807
Merged
SNP id current9970807
Contextintron_variant
Intergenic0
Allele frequency0.92
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.12
%95 Ci[1.08-1.16]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitmyocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST003117