SNP Detail For rs9956878
1.Mapping Information
Human SNP ID rs9956878
Human chromosome chr18
Human SNP position 75824756
Pig chromosome chr1
Pig SNP position 164284254
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region18q23
Chromosome idchr18
Chromosome position75824756
Reported geneintergenic
Mapped geneLOC100505853 - LOC105372203
Upstream gene id100505853
Downstream gene id105372203
SNP gene ids
Upstream gene distance112353
Downstream gene distance180282
SNP risk allelers9956878-A
SNPsrs9956878
Merged0
SNP id current9956878
Contextintergenic_variant
Intergenic1
Allele frequency0.427
P value0.000008
Pvalue mlog5.09691001300805
P value text(TC )
Or beta0.02
%95 Ci[NR] mg/dL increase
PlatformIllumina [899892]
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region18q23
Chromosome idchr18
Chromosome position75824756
Reported geneintergenic
Mapped geneLOC100505853 - LOC105372203
Upstream gene id100505853
Downstream gene id105372203
SNP gene ids
Upstream gene distance112353
Downstream gene distance180282
SNP risk allelers9956878-A
SNPsrs9956878
Merged0
SNP id current9956878
Contextintergenic_variant
Intergenic1
Allele frequency0.427
P value0.000002
Pvalue mlog5.69897000433601
P value text(LDL )
Or beta0.02
%95 Ci[NR] mg/dL increase
PlatformIllumina [899892]
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST001762