Human SNP ID | rs9956878 |
---|---|
Human chromosome | chr18 |
Human SNP position | 75824756 |
Pig chromosome | chr1 |
Pig SNP position | 164284254 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 18q23 |
Chromosome id | chr18 |
Chromosome position | 75824756 |
Reported gene | intergenic |
Mapped gene | LOC100505853 - LOC105372203 |
Upstream gene id | 100505853 |
Downstream gene id | 105372203 |
SNP gene ids | |
Upstream gene distance | 112353 |
Downstream gene distance | 180282 |
SNP risk allele | rs9956878-A |
SNPs | rs9956878 |
Merged | 0 |
SNP id current | 9956878 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.427 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (TC ) |
Or beta | 0.02 |
%95 Ci | [NR] mg/dL increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST001762 |
PubMed ID | 23251661 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 18q23 |
Chromosome id | chr18 |
Chromosome position | 75824756 |
Reported gene | intergenic |
Mapped gene | LOC100505853 - LOC105372203 |
Upstream gene id | 100505853 |
Downstream gene id | 105372203 |
SNP gene ids | |
Upstream gene distance | 112353 |
Downstream gene distance | 180282 |
SNP risk allele | rs9956878-A |
SNPs | rs9956878 |
Merged | 0 |
SNP id current | 9956878 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.427 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (LDL ) |
Or beta | 0.02 |
%95 Ci | [NR] mg/dL increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST001762 |