SNP Detail For rs9949617
1.Mapping Information
Human SNP ID rs9949617
Human chromosome chr18
Human SNP position 23299253
Pig chromosome chr6
Pig SNP position 100805819
2.Annotation Information
PubMed ID23505323
JournalJ Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23505323
StudyGenomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.
Disease/TraitHypertriglyceridemia
Initial sample1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls
Replication sample1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls
Region18q11.2
Chromosome idchr18
Chromosome position23299253
Reported geneCABLES1, C18orf45
Mapped geneTMEM241
Upstream gene id
Downstream gene id
SNP gene ids85019
Upstream gene distance
Downstream gene distance
SNP risk allelers9949617-?
SNPsrs9949617
Merged0
SNP id current9949617
Contextintron_variant
Intergenic0
Allele frequency0.53
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.28
%95 Ci[1.18-1.38]
PlatformIllumina [1361436] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST001905