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SNP Detail For rs9948784
1.Mapping Information
| Human SNP ID | rs9948784 |
|---|---|
| Human chromosome | chr18 |
| Human SNP position | 75185206 |
| Pig chromosome | chr1 |
| Pig SNP position | 164796388 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 18q22.3 |
| Chromosome id | chr18 |
| Chromosome position | 75185206 |
| Reported gene | NR |
| Mapped gene | LOC105376874 - ZADH2 |
| Upstream gene id | 105376874 |
| Downstream gene id | 284273 |
| SNP gene ids | |
| Upstream gene distance | 16948 |
| Downstream gene distance | 12117 |
| SNP risk allele | rs9948784-G |
| SNPs | rs9948784 |
| Merged | 0 |
| SNP id current | 9948784 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.9873089 |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (IGP1) |
| Or beta | 1.8106 |
| %95 Ci | [1.08-2.54] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 18q22.3 |
| Chromosome id | chr18 |
| Chromosome position | 75185206 |
| Reported gene | NR |
| Mapped gene | LOC105376874 - ZADH2 |
| Upstream gene id | 105376874 |
| Downstream gene id | 284273 |
| SNP gene ids | |
| Upstream gene distance | 16948 |
| Downstream gene distance | 12117 |
| SNP risk allele | rs9948784-G |
| SNPs | rs9948784 |
| Merged | 0 |
| SNP id current | 9948784 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.9873229 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (IGP41) |
| Or beta | 1.7711 |
| %95 Ci | [1.04-2.5] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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