SNP Detail For rs9942541
1.Mapping Information
Human SNP ID rs9942541
Human chromosome chr6
Human SNP position 39156906
Pig chromosome chr7
Pig SNP position 39674051
2.Annotation Information
PubMed ID24564958
JournalMol Autism
Linkwww.ncbi.nlm.nih.gov/pubmed/24564958
StudyVariability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.
Disease/TraitSocial communication problems
Initial sampleUp to 5,628 European ancestry individuals
Replication sampleNA
Region6p21.2
Chromosome idchr6
Chromosome position39156906
Reported geneKCNK5
Mapped geneSAYSD1 - KCNK5
Upstream gene id55776
Downstream gene id8645
SNP gene ids
Upstream gene distance41720
Downstream gene distance32065
SNP risk allelers9942541-T
SNPsrs9942541
Merged0
SNP id current9942541
Contextintergenic_variant
Intergenic1
Allele frequency0.05
P value0.000005
Pvalue mlog5.30102999566398
P value text(Age 8)
Or beta0.23
%95 Ci[0.13-0.33] unit increase
PlatformIllumina [2293137] (imputed)
CNVN
Mapped traitsocial communication impairment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005427
Study accessionGCST002367