Human SNP ID | rs993925 |
---|---|
Human chromosome | chr1 |
Human SNP position | 218686726 |
Pig chromosome | chr10 |
Pig SNP position | 10625578 |
PubMed ID | 21946350 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21946350 |
Study | Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. |
Disease/Trait | Pulmonary function |
Initial sample | 48,201 European ancestry individuals |
Replication sample | 46,411 European ancestry individuals |
Region | 1q41 |
Chromosome id | chr1 |
Chromosome position | 218686726 |
Reported gene | TGFB2 |
Mapped gene | TGFB2 - LOC105372924 |
Upstream gene id | 7042 |
Downstream gene id | 105372924 |
SNP gene ids | |
Upstream gene distance | 242107 |
Downstream gene distance | 11861 |
SNP risk allele | rs993925-T |
SNPs | rs993925 |
Merged | 0 |
SNP id current | 993925 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.31 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (FEV1/FVC) |
Or beta | 0.034 |
%95 Ci | [0.022-0.046] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement, FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001248 |