SNP Detail For rs993925
1.Mapping Information
Human SNP ID rs993925
Human chromosome chr1
Human SNP position 218686726
Pig chromosome chr10
Pig SNP position 10625578
2.Annotation Information
PubMed ID21946350
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21946350
StudyGenome-wide association and large-scale follow up identifies 16 new loci influencing lung function.
Disease/TraitPulmonary function
Initial sample48,201 European ancestry individuals
Replication sample46,411 European ancestry individuals
Region1q41
Chromosome idchr1
Chromosome position218686726
Reported geneTGFB2
Mapped geneTGFB2 - LOC105372924
Upstream gene id7042
Downstream gene id105372924
SNP gene ids
Upstream gene distance242107
Downstream gene distance11861
SNP risk allelers993925-T
SNPsrs993925
Merged0
SNP id current993925
Contextregulatory_region_variant
Intergenic1
Allele frequency0.31
P value0.00000001
Pvalue mlog8
P value text(FEV1/FVC)
Or beta0.034
%95 Ci[0.022-0.046] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement, FEV/FEC ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST001248