Human SNP ID | rs9936833 |
---|---|
Human chromosome | chr16 |
Human SNP position | 86369512 |
Pig chromosome | chr6 |
Pig SNP position | 2995097 |
PubMed ID | 22961001 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22961001 |
Study | Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett__s esophagus. |
Disease/Trait | Barrett__s esophagus |
Initial sample | Up to 1,852 European ancestry cases, 5,172 European ancestry controls |
Replication sample | 5,986 European ancestry cases, 12,825 European ancestry controls |
Region | 16q24.1 |
Chromosome id | chr16 |
Chromosome position | 86369512 |
Reported gene | FOXF1, LOC732275 |
Mapped gene | LINC00917 - FENDRR |
Upstream gene id | 732275 |
Downstream gene id | 400550 |
SNP gene ids | |
Upstream gene distance | 23833 |
Downstream gene distance | 105013 |
SNP risk allele | rs9936833-C |
SNPs | rs9936833 |
Merged | 0 |
SNP id current | 9936833 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.37 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.14 |
%95 Ci | [1.10-1.19] |
Platform | Illumina [521744] |
CNV | N |
Mapped trait | Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST001675 |