SNP Detail For rs9936833
1.Mapping Information
Human SNP ID rs9936833
Human chromosome chr16
Human SNP position 86369512
Pig chromosome chr6
Pig SNP position 2995097
2.Annotation Information
PubMed ID22961001
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22961001
StudyCommon variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett__s esophagus.
Disease/TraitBarrett__s esophagus
Initial sampleUp to 1,852 European ancestry cases, 5,172 European ancestry controls
Replication sample5,986 European ancestry cases, 12,825 European ancestry controls
Region16q24.1
Chromosome idchr16
Chromosome position86369512
Reported geneFOXF1, LOC732275
Mapped geneLINC00917 - FENDRR
Upstream gene id732275
Downstream gene id400550
SNP gene ids
Upstream gene distance23833
Downstream gene distance105013
SNP risk allelers9936833-C
SNPsrs9936833
Merged0
SNP id current9936833
Contextintergenic_variant
Intergenic1
Allele frequency0.37
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta1.14
%95 Ci[1.10-1.19]
PlatformIllumina [521744]
CNVN
Mapped traitBarrett__s esophagus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000280
Study accessionGCST001675