SNP Detail For rs993226
1.Mapping Information
Human SNP ID rs993226
Human chromosome chr12
Human SNP position 84492794
Pig chromosome chr5
Pig SNP position 102493480
2.Annotation Information
PubMed ID26542096
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26542096
StudyMeta-analysis identifies seven susceptibility loci involved in the atopic march.
Disease/TraitAtopic march
Initial sample1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls
Replication sample1,277 European ancestry early-onset eczema and childhood asthma cases, 7,004 European ancestry controls
Region12q21.31
Chromosome idchr12
Chromosome position84492794
Reported geneSLC6A15, TMTC2
Mapped geneLOC105369875
Upstream gene id
Downstream gene id
SNP gene ids105369875
Upstream gene distance
Downstream gene distance
SNP risk allelers993226-G
SNPsrs993226
Merged
SNP id current993226
Contextintergenic_variant
Intergenic0
Allele frequency0.034
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.58
%95 Ci[1.35-1.84]
PlatformAffymetrix, Illumina [1633153] (imputed)
CNVN
Mapped traitchildhood onset asthma, atopic eczema
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004591, http://www.ebi.ac.uk/efo/EFO_0000274
Study accessionGCST003180