Human SNP ID | rs993226 |
---|---|
Human chromosome | chr12 |
Human SNP position | 84492794 |
Pig chromosome | chr5 |
Pig SNP position | 102493480 |
PubMed ID | 26542096 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26542096 |
Study | Meta-analysis identifies seven susceptibility loci involved in the atopic march. |
Disease/Trait | Atopic march |
Initial sample | 1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls |
Replication sample | 1,277 European ancestry early-onset eczema and childhood asthma cases, 7,004 European ancestry controls |
Region | 12q21.31 |
Chromosome id | chr12 |
Chromosome position | 84492794 |
Reported gene | SLC6A15, TMTC2 |
Mapped gene | LOC105369875 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105369875 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs993226-G |
SNPs | rs993226 |
Merged | |
SNP id current | 993226 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.034 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 1.58 |
%95 Ci | [1.35-1.84] |
Platform | Affymetrix, Illumina [1633153] (imputed) |
CNV | N |
Mapped trait | childhood onset asthma, atopic eczema |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004591, http://www.ebi.ac.uk/efo/EFO_0000274 |
Study accession | GCST003180 |