Human SNP ID | rs9924561 |
---|---|
Human chromosome | chr16 |
Human SNP position | 264781 |
Pig chromosome | chr3 |
Pig SNP position | 41021227 |
PubMed ID | 23696099 |
---|---|
Journal | G3 (Bethesda) |
Link | www.ncbi.nlm.nih.gov/pubmed/23696099 |
Study | Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study. |
Disease/Trait | Red blood cell traits |
Initial sample | 1904 African American individuals |
Replication sample | 411 African American individuals |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 264781 |
Reported gene | ITFG3 |
Mapped gene | ITFG3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83986 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9924561-T |
SNPs | rs9924561 |
Merged | 0 |
SNP id current | 9924561 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 5E-29 |
Pvalue mlog | 28.3010299956639 |
P value text | (MCV) |
Or beta | 3.57 |
%95 Ci | [2.94-4.20] fL decrease |
Platform | Illumina [907954] |
CNV | N |
Mapped trait | mean corpuscular volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004526 |
Study accession | GCST002027 |
PubMed ID | 23696099 |
Journal | G3 (Bethesda) |
Link | www.ncbi.nlm.nih.gov/pubmed/23696099 |
Study | Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study. |
Disease/Trait | Red blood cell traits |
Initial sample | 1904 African American individuals |
Replication sample | 411 African American individuals |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 264781 |
Reported gene | ITFG3 |
Mapped gene | ITFG3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83986 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9924561-T |
SNPs | rs9924561 |
Merged | 0 |
SNP id current | 9924561 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 8E-36 |
Pvalue mlog | 35.096910013008 |
P value text | (MCH) |
Or beta | 1.56 |
%95 Ci | [1.32-1.80] pg decrease |
Platform | Illumina [907954] |
CNV | N |
Mapped trait | mean corpuscular hemoglobin |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004527 |
Study accession | GCST002027 |
PubMed ID | 23696099 |
Journal | G3 (Bethesda) |
Link | www.ncbi.nlm.nih.gov/pubmed/23696099 |
Study | Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study. |
Disease/Trait | Red blood cell traits |
Initial sample | 1904 African American individuals |
Replication sample | 411 African American individuals |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 264781 |
Reported gene | ITFG3 |
Mapped gene | ITFG3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83986 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9924561-T |
SNPs | rs9924561 |
Merged | 0 |
SNP id current | 9924561 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.00000000000000009 |
Pvalue mlog | 16.0457574905606 |
P value text | (MCHC) |
Or beta | 0.47 |
%95 Ci | [0.35-0.59] unit decrease |
Platform | Illumina [907954] |
CNV | N |
Mapped trait | mean corpuscular hemoglobin concentration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004528 |
Study accession | GCST002027 |