SNP Detail For rs9924561
1.Mapping Information
Human SNP ID rs9924561
Human chromosome chr16
Human SNP position 264781
Pig chromosome chr3
Pig SNP position 41021227
2.Annotation Information
PubMed ID23696099
JournalG3 (Bethesda)
Linkwww.ncbi.nlm.nih.gov/pubmed/23696099
StudyGenetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.
Disease/TraitRed blood cell traits
Initial sample1904 African American individuals
Replication sample411 African American individuals
Region16p13.3
Chromosome idchr16
Chromosome position264781
Reported geneITFG3
Mapped geneITFG3
Upstream gene id
Downstream gene id
SNP gene ids83986
Upstream gene distance
Downstream gene distance
SNP risk allelers9924561-T
SNPsrs9924561
Merged0
SNP id current9924561
Contextintron_variant
Intergenic0
Allele frequency0.1
P value5E-29
Pvalue mlog28.3010299956639
P value text(MCV)
Or beta3.57
%95 Ci[2.94-4.20] fL decrease
PlatformIllumina [907954]
CNVN
Mapped traitmean corpuscular volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004526
Study accessionGCST002027
PubMed ID23696099
JournalG3 (Bethesda)
Linkwww.ncbi.nlm.nih.gov/pubmed/23696099
StudyGenetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.
Disease/TraitRed blood cell traits
Initial sample1904 African American individuals
Replication sample411 African American individuals
Region16p13.3
Chromosome idchr16
Chromosome position264781
Reported geneITFG3
Mapped geneITFG3
Upstream gene id
Downstream gene id
SNP gene ids83986
Upstream gene distance
Downstream gene distance
SNP risk allelers9924561-T
SNPsrs9924561
Merged0
SNP id current9924561
Contextintron_variant
Intergenic0
Allele frequency0.1
P value8E-36
Pvalue mlog35.096910013008
P value text(MCH)
Or beta1.56
%95 Ci[1.32-1.80] pg decrease
PlatformIllumina [907954]
CNVN
Mapped traitmean corpuscular hemoglobin
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004527
Study accessionGCST002027
PubMed ID23696099
JournalG3 (Bethesda)
Linkwww.ncbi.nlm.nih.gov/pubmed/23696099
StudyGenetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.
Disease/TraitRed blood cell traits
Initial sample1904 African American individuals
Replication sample411 African American individuals
Region16p13.3
Chromosome idchr16
Chromosome position264781
Reported geneITFG3
Mapped geneITFG3
Upstream gene id
Downstream gene id
SNP gene ids83986
Upstream gene distance
Downstream gene distance
SNP risk allelers9924561-T
SNPsrs9924561
Merged0
SNP id current9924561
Contextintron_variant
Intergenic0
Allele frequency0.1
P value0.00000000000000009
Pvalue mlog16.0457574905606
P value text(MCHC)
Or beta0.47
%95 Ci[0.35-0.59] unit decrease
PlatformIllumina [907954]
CNVN
Mapped traitmean corpuscular hemoglobin concentration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004528
Study accessionGCST002027