SNP Detail For rs9922678
1.Mapping Information
Human SNP ID rs9922678
Human chromosome chr16
Human SNP position 9852462
Pig chromosome chr3
Pig SNP position 33770556
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region16p13.2
Chromosome idchr16
Chromosome position9852462
Reported geneGRIN2A
Mapped geneGRIN2A
Upstream gene id
Downstream gene id
SNP gene ids2903
Upstream gene distance
Downstream gene distance
SNP risk allelers9922678-A
SNPsrs9922678
Merged0
SNP id current9922678
Contextintron_variant
Intergenic0
Allele frequency0.281
P value0.00000001
Pvalue mlog8
P value text
Or beta1.067
%95 Ci[1.043-1.091]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region16p13.2
Chromosome idchr16
Chromosome position9852462
Reported geneNR
Mapped geneGRIN2A
Upstream gene id
Downstream gene id
SNP gene ids2903
Upstream gene distance
Downstream gene distance
SNP risk allelers9922678-A
SNPsrs9922678
Merged0
SNP id current9922678
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.07
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048