SNP Detail For rs9921518
1.Mapping Information
Human SNP ID rs9921518
Human chromosome chr16
Human SNP position 54460512
Pig chromosome chr6
Pig SNP position 28019850
2.Annotation Information
PubMed ID21546767
JournalAm J Nephrol
Linkwww.ncbi.nlm.nih.gov/pubmed/21546767
StudyGenome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.
Disease/TraitDialysis-related mortality
Initial sample610 African American type 2 diabetes cases
Replication sampleNA
Region16q12.2
Chromosome idchr16
Chromosome position54460512
Reported geneIRX5, IRX3
Mapped geneLOC105371272 - LOC105371273
Upstream gene id105371272
Downstream gene id105371273
SNP gene ids
Upstream gene distance85796
Downstream gene distance85216
SNP risk allelers9921518-?
SNPsrs9921518
Merged0
SNP id current9921518
Contextregulatory_region_variant
Intergenic1
Allele frequency0.28
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta2.11
%95 Ci[1.52-2.93]
PlatformAffymetrix [832357]
CNVN
Mapped traitchronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST001066