SNP Detail For rs9920
1.Mapping Information
Human SNP ID rs9920
Human chromosome chr7
Human SNP position 116560038
Pig chromosome chr18
Pig SNP position 31746825
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region7q31.2
Chromosome idchr7
Chromosome position116560038
Reported geneCAV1
Mapped geneCAV1
Upstream gene id
Downstream gene id
SNP gene ids857
Upstream gene distance
Downstream gene distance
SNP risk allelers9920-C
SNPsrs9920
Merged0
SNP id current9920
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.093
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.79
%95 Ci[0.52-1.06] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500