SNP Detail For rs9914578
1.Mapping Information
Human SNP ID rs9914578
Human chromosome chr17
Human SNP position 2101842
Pig chromosome chr12
Pig SNP position 50066599
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region17p13.3
Chromosome idchr17
Chromosome position2101842
Reported geneSMG6
Mapped geneSMG6
Upstream gene id
Downstream gene id
SNP gene ids23293
Upstream gene distance
Downstream gene distance
SNP risk allelers9914578-G
SNPsrs9914578
Merged0
SNP id current9914578
Contextintron_variant
Intergenic0
Allele frequency0.212
P value0.00000008
Pvalue mlog7.09691001300805
P value text(EA, men)
Or beta0.026
%95 Ci[0.017-0.036] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region17p13.3
Chromosome idchr17
Chromosome position2101842
Reported geneSMG6
Mapped geneSMG6
Upstream gene id
Downstream gene id
SNP gene ids23293
Upstream gene distance
Downstream gene distance
SNP risk allelers9914578-G
SNPsrs9914578
Merged0
SNP id current9914578
Contextintron_variant
Intergenic0
Allele frequency0.211
P value0.00000009
Pvalue mlog7.04575749056067
P value text(EA)
Or beta0.02
%95 Ci[0.013-0.028] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region17p13.3
Chromosome idchr17
Chromosome position2101842
Reported geneSMG6
Mapped geneSMG6
Upstream gene id
Downstream gene id
SNP gene ids23293
Upstream gene distance
Downstream gene distance
SNP risk allelers9914578-G
SNPsrs9914578
Merged0
SNP id current9914578
Contextintron_variant
Intergenic0
Allele frequency0.229
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.02
%95 Ci[0.013-0.027] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783