SNP Detail For rs991427
1.Mapping Information
Human SNP ID rs991427
Human chromosome chr12
Human SNP position 91080645
Pig chromosome chr5
Pig SNP position 96195757
2.Annotation Information
PubMed ID24376456
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24376456
StudyGene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.
Disease/TraitSystolic blood pressure (alcohol consumption interaction)
Initial sampleup to 6,882 European ancestry individuals
Replication sampleNA
Region12q21.33
Chromosome idchr12
Chromosome position91080645
Reported geneKERA, LUM
Mapped geneKERA - LUM
Upstream gene id11081
Downstream gene id4060
SNP gene ids
Upstream gene distance22291
Downstream gene distance22810
SNP risk allelers991427-T
SNPsrs991427
Merged0
SNP id current991427
Contextintergenic_variant
Intergenic1
Allele frequency0.14
P value0.0000002
Pvalue mlog6.69897000433601
P value text(Oz alcohol/week)
Or beta0.412
%95 Ci[0.14-0.68] unit increase
PlatformAffymetrix [2500000] (imputed)
CNVN
Mapped traitsystolic blood pressure, alcohol drinking
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004329
Study accessionGCST002307