Human SNP ID | rs991427 |
---|---|
Human chromosome | chr12 |
Human SNP position | 91080645 |
Pig chromosome | chr5 |
Pig SNP position | 96195757 |
PubMed ID | 24376456 |
---|---|
Journal | Front Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24376456 |
Study | Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. |
Disease/Trait | Systolic blood pressure (alcohol consumption interaction) |
Initial sample | up to 6,882 European ancestry individuals |
Replication sample | NA |
Region | 12q21.33 |
Chromosome id | chr12 |
Chromosome position | 91080645 |
Reported gene | KERA, LUM |
Mapped gene | KERA - LUM |
Upstream gene id | 11081 |
Downstream gene id | 4060 |
SNP gene ids | |
Upstream gene distance | 22291 |
Downstream gene distance | 22810 |
SNP risk allele | rs991427-T |
SNPs | rs991427 |
Merged | 0 |
SNP id current | 991427 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.14 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (Oz alcohol/week) |
Or beta | 0.412 |
%95 Ci | [0.14-0.68] unit increase |
Platform | Affymetrix [2500000] (imputed) |
CNV | N |
Mapped trait | systolic blood pressure, alcohol drinking |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004329 |
Study accession | GCST002307 |