SNP Detail For rs9907236
1.Mapping Information
Human SNP ID rs9907236
Human chromosome chr17
Human SNP position 71493932
Pig chromosome chr12
Pig SNP position 9573934
2.Annotation Information
PubMed ID23870195
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23870195
StudyGenetics of coronary artery calcification among African Americans, a meta-analysis.
Disease/TraitCoronary artery calcification
Initial sample5,823 African American individuals
Replication sample9,992 European ancestry individuals
Region17q24.3
Chromosome idchr17
Chromosome position71493932
Reported geneSOX9
Mapped geneCASC17 - LOC124685
Upstream gene id101928165
Downstream gene id124685
SNP gene ids
Upstream gene distance291753
Downstream gene distance127006
SNP risk allelers9907236-A
SNPsrs9907236
Merged0
SNP id current9907236
Contextintergenic_variant
Intergenic1
Allele frequency0.06
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.51
%95 Ci[0.29-0.73] unit increase
PlatformAffymetrix, Illumina [up to 2727966] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST002097