Human SNP ID | rs9907236 |
---|---|
Human chromosome | chr17 |
Human SNP position | 71493932 |
Pig chromosome | chr12 |
Pig SNP position | 9573934 |
PubMed ID | 23870195 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23870195 |
Study | Genetics of coronary artery calcification among African Americans, a meta-analysis. |
Disease/Trait | Coronary artery calcification |
Initial sample | 5,823 African American individuals |
Replication sample | 9,992 European ancestry individuals |
Region | 17q24.3 |
Chromosome id | chr17 |
Chromosome position | 71493932 |
Reported gene | SOX9 |
Mapped gene | CASC17 - LOC124685 |
Upstream gene id | 101928165 |
Downstream gene id | 124685 |
SNP gene ids | |
Upstream gene distance | 291753 |
Downstream gene distance | 127006 |
SNP risk allele | rs9907236-A |
SNPs | rs9907236 |
Merged | 0 |
SNP id current | 9907236 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.06 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (AA) |
Or beta | 0.51 |
%95 Ci | [0.29-0.73] unit increase |
Platform | Affymetrix, Illumina [up to 2727966] (imputed) |
CNV | N |
Mapped trait | coronary artery calcification |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004723 |
Study accession | GCST002097 |