Human SNP ID | rs9902453 |
---|---|
Human chromosome | chr17 |
Human SNP position | 30022077 |
Pig chromosome | chr12 |
Pig SNP position | 48354884 |
PubMed ID | 25288136 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25288136 |
Study | Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption. |
Disease/Trait | Coffee consumption (cups per day) |
Initial sample | 91,462 European ancestry individuals |
Replication sample | 30,062 European ancestry individuals, 7,964 African American individuals |
Region | 17q11.2 |
Chromosome id | chr17 |
Chromosome position | 30022077 |
Reported gene | EFCAB5, SSH2, CCDC55 |
Mapped gene | EFCAB5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 374786 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9902453-A |
SNPs | rs9902453 |
Merged | 0 |
SNP id current | 9902453 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.54 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.01-0.05] unit decrease |
Platform | Affymetrix, Illumina [2373958] (imputed) |
CNV | N |
Mapped trait | coffee consumption, cups of coffee per day measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004330, http://www.ebi.ac.uk/efo/EFO_0006782 |
Study accession | GCST002650 |