SNP Detail For rs9902453
1.Mapping Information
Human SNP ID rs9902453
Human chromosome chr17
Human SNP position 30022077
Pig chromosome chr12
Pig SNP position 48354884
2.Annotation Information
PubMed ID25288136
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25288136
StudyGenome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.
Disease/TraitCoffee consumption (cups per day)
Initial sample91,462 European ancestry individuals
Replication sample30,062 European ancestry individuals, 7,964 African American individuals
Region17q11.2
Chromosome idchr17
Chromosome position30022077
Reported geneEFCAB5, SSH2, CCDC55
Mapped geneEFCAB5
Upstream gene id
Downstream gene id
SNP gene ids374786
Upstream gene distance
Downstream gene distance
SNP risk allelers9902453-A
SNPsrs9902453
Merged0
SNP id current9902453
Contextintron_variant
Intergenic0
Allele frequency0.54
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.03
%95 Ci[0.01-0.05] unit decrease
PlatformAffymetrix, Illumina [2373958] (imputed)
CNVN
Mapped traitcoffee consumption, cups of coffee per day measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004330, http://www.ebi.ac.uk/efo/EFO_0006782
Study accessionGCST002650