SNP Detail For rs9902403
1.Mapping Information
Human SNP ID rs9902403
Human chromosome chr17
Human SNP position 2924664
Pig chromosome chr12
Pig SNP position 50697783
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region17p13.3
Chromosome idchr17
Chromosome position2924664
Reported geneRAP1GAP2
Mapped geneRAP1GAP2
Upstream gene id
Downstream gene id
SNP gene ids23108
Upstream gene distance
Downstream gene distance
SNP risk allelers9902403-?
SNPsrs9902403
Merged0
SNP id current9902403
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(Psoriasis)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740