Human SNP ID | rs9901756 |
---|---|
Human chromosome | chr17 |
Human SNP position | 34137135 |
Pig chromosome | chr12 |
Pig SNP position | 42623890 |
PubMed ID | 22493691 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22493691 |
Study | Novel associations for hypothyroidism include known autoimmune risk loci. |
Disease/Trait | Hypothyroidism |
Initial sample | 3,736 European ancestry cases, 35,546 European ancestry controls |
Replication sample | NA |
Region | 17q12 |
Chromosome id | chr17 |
Chromosome position | 34137135 |
Reported gene | CCL2, LOC100131744 |
Mapped gene | ASIC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 40 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9901756-A |
SNPs | rs9901756 |
Merged | 0 |
SNP id current | 9901756 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.893 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.21 |
%95 Ci | [1.11-1.32] |
Platform | Illumina [870065] |
CNV | N |
Mapped trait | hypothyroidism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004705 |
Study accession | GCST001474 |