SNP Detail For rs9899375
1.Mapping Information
Human SNP ID rs9899375
Human chromosome chr17
Human SNP position 7908297
Pig chromosome chr12
Pig SNP position 55525172
2.Annotation Information
PubMed ID26089329
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26089329
StudyMeta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.
Disease/TraitStroke
Initial sampleup to 1,592 African American cases, up to 13,154 African American controls
Replication sampleNA
Region17p13.1
Chromosome idchr17
Chromosome position7908297
Reported geneCHD3
Mapped geneCHD3
Upstream gene id
Downstream gene id
SNP gene ids1107
Upstream gene distance
Downstream gene distance
SNP risk allelers9899375-T
SNPsrs9899375
Merged
SNP id current9899375
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.00000001
Pvalue mlog8
P value text(cohort study)
Or beta2.57
%95 Ci[1.86-3.55]
PlatformAffymetrix, Illumina [up to 2600000] (imputed)
CNVN
Mapped traitstroke
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000712
Study accessionGCST002987
PubMed ID26089329
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/26089329
StudyMeta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.
Disease/TraitIschemic stroke
Initial sampleup to 1,365 African American cases, up to 13,154 African American controls
Replication sampleEuropean ancestry individuals (see Traylor, 2012)
Region17p13.1
Chromosome idchr17
Chromosome position7908297
Reported geneCHD3
Mapped geneCHD3
Upstream gene id
Downstream gene id
SNP gene ids1107
Upstream gene distance
Downstream gene distance
SNP risk allelers9899375-T
SNPsrs9899375
Merged
SNP id current9899375
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.000000005
Pvalue mlog8.30102999566398
P value text(cohort study, AA)
Or beta3.3
%95 Ci[2.21-4.93]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitIschemic stroke
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0002140
Study accessionGCST002988