Human SNP ID | rs9899375 |
---|---|
Human chromosome | chr17 |
Human SNP position | 7908297 |
Pig chromosome | chr12 |
Pig SNP position | 55525172 |
PubMed ID | 26089329 |
---|---|
Journal | Stroke |
Link | www.ncbi.nlm.nih.gov/pubmed/26089329 |
Study | Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans. |
Disease/Trait | Stroke |
Initial sample | up to 1,592 African American cases, up to 13,154 African American controls |
Replication sample | NA |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 7908297 |
Reported gene | CHD3 |
Mapped gene | CHD3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1107 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9899375-T |
SNPs | rs9899375 |
Merged | |
SNP id current | 9899375 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (cohort study) |
Or beta | 2.57 |
%95 Ci | [1.86-3.55] |
Platform | Affymetrix, Illumina [up to 2600000] (imputed) |
CNV | N |
Mapped trait | stroke |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000712 |
Study accession | GCST002987 |
PubMed ID | 26089329 |
Journal | Stroke |
Link | www.ncbi.nlm.nih.gov/pubmed/26089329 |
Study | Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans. |
Disease/Trait | Ischemic stroke |
Initial sample | up to 1,365 African American cases, up to 13,154 African American controls |
Replication sample | European ancestry individuals (see Traylor, 2012) |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 7908297 |
Reported gene | CHD3 |
Mapped gene | CHD3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1107 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9899375-T |
SNPs | rs9899375 |
Merged | |
SNP id current | 9899375 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | (cohort study, AA) |
Or beta | 3.3 |
%95 Ci | [2.21-4.93] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | Ischemic stroke |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0002140 |
Study accession | GCST002988 |