SNP Detail For rs9898058
1.Mapping Information
Human SNP ID rs9898058
Human chromosome chr17
Human SNP position 49741459
Pig chromosome chr12
Pig SNP position 25929563
2.Annotation Information
PubMed ID25710614
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25710614
StudyGenome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.
Disease/TraitMilk allergy
Initial sample291 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 614 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls
Replication sampleNA
Region17q21.33
Chromosome idchr17
Chromosome position49741459
Reported geneFAM117A
Mapped geneFAM117A
Upstream gene id
Downstream gene id
SNP gene ids81558
Upstream gene distance
Downstream gene distance
SNP risk allelers9898058-?
SNPsrs9898058
Merged0
SNP id current9898058
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformIllumina [6459842] (imputed)
CNVN
Mapped traitmilk allergy measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007019
Study accessionGCST002788