SNP Detail For rs9892651
1.Mapping Information
Human SNP ID rs9892651
Human chromosome chr17
Human SNP position 66307675
Pig chromosome chr12
Pig SNP position 13202473
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region17q24.2
Chromosome idchr17
Chromosome position66307675
Reported genePRKCA
Mapped genePRKCA
Upstream gene id
Downstream gene id
SNP gene ids5578
Upstream gene distance
Downstream gene distance
SNP risk allelers9892651-C
SNPsrs9892651
Merged0
SNP id current9892651
Contextintron_variant
Intergenic0
Allele frequency0.429
P value0.00000000000003
Pvalue mlog13.5228787452803
P value text
Or beta0.74
%95 Ci[0.54-0.94] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500