Human SNP ID | rs9891119 |
---|---|
Human chromosome | chr17 |
Human SNP position | 42355962 |
Pig chromosome | chr12 |
Pig SNP position | 20747872 |
PubMed ID | 21833088 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21833088 |
Study | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 9,772 European ancestry cases, 16,849 European ancestry controls |
Replication sample | 4,218 European ancestry cases, 7,296 European ancestry controls |
Region | 17q21.2 |
Chromosome id | chr17 |
Chromosome position | 42355962 |
Reported gene | STAT3 |
Mapped gene | STAT3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6774 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9891119-C |
SNPs | rs9891119 |
Merged | 0 |
SNP id current | 9891119 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.09-1.12] |
Platform | Illumina [465434] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001198 |
PubMed ID | 23266558 |
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/23266558 |
Study | A genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population. |
Disease/Trait | Crohn__s disease |
Initial sample | 372 Japanese ancestry cases,3,389 Japanese ancestry controls |
Replication sample | Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls |
Region | 17q21.2 |
Chromosome id | chr17 |
Chromosome position | 42355962 |
Reported gene | STAT3 |
Mapped gene | STAT3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6774 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9891119-A |
SNPs | rs9891119 |
Merged | 0 |
SNP id current | 9891119 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.27-1.48] |
Platform | Illumina [4929034] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001785 |