SNP Detail For rs9883650
1.Mapping Information
Human SNP ID rs9883650
Human chromosome chr3
Human SNP position 169362397
Pig chromosome chr13
Pig SNP position 116743848
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-1beta)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region3q26.2
Chromosome idchr3
Chromosome position169362397
Reported geneMDS1
Mapped geneMECOM
Upstream gene id
Downstream gene id
SNP gene ids2122
Upstream gene distance
Downstream gene distance
SNP risk allelers9883650-C
SNPsrs9883650
Merged0
SNP id current9883650
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000004
Pvalue mlog6.39794000867203
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001533