SNP Detail For rs9883204
1.Mapping Information
Human SNP ID rs9883204
Human chromosome chr3
Human SNP position 123377973
Pig chromosome chr13
Pig SNP position 146480459
2.Annotation Information
PubMed ID20372150
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20372150
StudyVariants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight.
Disease/TraitBirth weight
Initial sample10,623 European ancestry individuals
Replication sample27,591 European ancestry individuals, 1,415 Filipino ancestry individuals, 746 North African ancestry individuals, 333 Turkish ancestry individuals
Region3q21.1
Chromosome idchr3
Chromosome position123377973
Reported geneADCY5
Mapped geneADCY5
Upstream gene id
Downstream gene id
SNP gene ids111
Upstream gene distance
Downstream gene distance
SNP risk allelers9883204-C
SNPsrs9883204
Merged0
SNP id current9883204
Contextintron_variant
Intergenic0
Allele frequency
P value0.000000000000007
Pvalue mlog14.1549019599857
P value text
Or beta0.06
%95 Ci[0.047-0.079] s.d. decrease
PlatformAffymetrix, Illumina [~ 2400000] (imputed)
CNVN
Mapped traitbirth weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004344
Study accessionGCST000648
PubMed ID23202124
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23202124
StudyNew loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.
Disease/TraitBirth weight
Initial sampleUp to 26,836 European ancestry individuals
Replication sampleUp to 42,519 European ancestry individuals
Region3q21.1
Chromosome idchr3
Chromosome position123377973
Reported geneADCY5
Mapped geneADCY5
Upstream gene id
Downstream gene id
SNP gene ids111
Upstream gene distance
Downstream gene distance
SNP risk allelers9883204-C
SNPsrs9883204
Merged0
SNP id current9883204
Contextintron_variant
Intergenic0
Allele frequency0.76
P value6E-20
Pvalue mlog19.2218487496163
P value text
Or beta0.059
%95 Ci[0.047-0.071] gram decrease
PlatformAffymetrix, Illumina [~ 2700000] (imputed)
CNVN
Mapped traitbirth weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004344
Study accessionGCST001758