Human SNP ID | rs9877502 |
---|---|
Human chromosome | chr3 |
Human SNP position | 190951729 |
Pig chromosome | chr13 |
Pig SNP position | 137691045 |
PubMed ID | 23562540 |
---|---|
Journal | Neuron |
Link | www.ncbi.nlm.nih.gov/pubmed/23562540 |
Study | GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer__s disease. |
Disease/Trait | Alzheimer__s disease biomarkers |
Initial sample | 591 European ancestry cases, 687 European ancestry controls |
Replication sample | |
Region | 3q28 |
Chromosome id | chr3 |
Chromosome position | 190951729 |
Reported gene | UTS2D, SNAR-I, GEMC1, OSTNIL1-RAP, CCDC50 |
Mapped gene | SNAR-I - OSTN |
Upstream gene id | 100170222 |
Downstream gene id | 344901 |
SNP gene ids | |
Upstream gene distance | 73679 |
Downstream gene distance | 247413 |
SNP risk allele | rs9877502-A |
SNPs | rs9877502 |
Merged | 0 |
SNP id current | 9877502 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | (tau) |
Or beta | 0.052 |
%95 Ci | [NR] unit increase |
Platform | Illumina [5815690] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease, t-tau measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0004760 |
Study accession | GCST001951 |