SNP Detail For rs9877502
1.Mapping Information
Human SNP ID rs9877502
Human chromosome chr3
Human SNP position 190951729
Pig chromosome chr13
Pig SNP position 137691045
2.Annotation Information
PubMed ID23562540
JournalNeuron
Linkwww.ncbi.nlm.nih.gov/pubmed/23562540
StudyGWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer__s disease.
Disease/TraitAlzheimer__s disease biomarkers
Initial sample591 European ancestry cases, 687 European ancestry controls
Replication sample
Region3q28
Chromosome idchr3
Chromosome position190951729
Reported geneUTS2D, SNAR-I, GEMC1, OSTNIL1-RAP, CCDC50
Mapped geneSNAR-I - OSTN
Upstream gene id100170222
Downstream gene id344901
SNP gene ids
Upstream gene distance73679
Downstream gene distance247413
SNP risk allelers9877502-A
SNPsrs9877502
Merged0
SNP id current9877502
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000000005
Pvalue mlog8.30102999566398
P value text(tau)
Or beta0.052
%95 Ci[NR] unit increase
PlatformIllumina [5815690] (imputed)
CNVN
Mapped traitAlzheimers disease, t-tau measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0004760
Study accessionGCST001951