SNP Detail For rs9868873
1.Mapping Information
Human SNP ID rs9868873
Human chromosome chr3
Human SNP position 123012063
Pig chromosome chr13
Pig SNP position 147013962
2.Annotation Information
PubMed ID21642993
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21642993
StudyGenome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.
Disease/TraitEsophageal cancer
Initial sample2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls
Replication sample3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls
Region3q21.1
Chromosome idchr3
Chromosome position123012063
Reported geneSEMA5B
Mapped geneSEMA5B
Upstream gene id
Downstream gene id
SNP gene ids54437
Upstream gene distance
Downstream gene distance
SNP risk allelers9868873-G
SNPsrs9868873
Merged0
SNP id current9868873
Contextintron_variant
Intergenic0
Allele frequency0.82
P value0.0000001
Pvalue mlog7
P value text
Or beta1.19
%95 Ci[1.11-1.27]
PlatformAffymetrix [666141]
CNVN
Mapped traitesophageal carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002916
Study accessionGCST001089