Human SNP ID | rs9868873 |
---|---|
Human chromosome | chr3 |
Human SNP position | 123012063 |
Pig chromosome | chr13 |
Pig SNP position | 147013962 |
PubMed ID | 21642993 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21642993 |
Study | Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations. |
Disease/Trait | Esophageal cancer |
Initial sample | 2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls |
Replication sample | 3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls |
Region | 3q21.1 |
Chromosome id | chr3 |
Chromosome position | 123012063 |
Reported gene | SEMA5B |
Mapped gene | SEMA5B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54437 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9868873-G |
SNPs | rs9868873 |
Merged | 0 |
SNP id current | 9868873 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.82 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.11-1.27] |
Platform | Affymetrix [666141] |
CNV | N |
Mapped trait | esophageal carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002916 |
Study accession | GCST001089 |