SNP Detail For rs9854771
1.Mapping Information
Human SNP ID rs9854771
Human chromosome chr3
Human SNP position 189790682
Pig chromosome chr13
Pig SNP position 136430537
2.Annotation Information
PubMed ID26098869
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26098869
StudyCommon variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.
Disease/TraitPancreatic cancer
Initial sample7,638 cases, 7,364 controls
Replication sample2,287 cases, 4,205 controls
Region3q28
Chromosome idchr3
Chromosome position189790682
Reported geneTP63
Mapped geneTP63
Upstream gene id
Downstream gene id
SNP gene ids8626
Upstream gene distance
Downstream gene distance
SNP risk allelers9854771-G
SNPsrs9854771
Merged
SNP id current9854771
Contextintron_variant
Intergenic0
Allele frequency0.638
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.1235955
%95 Ci[1.08-1.18]
PlatformIllumina [866891] (imputed)
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST002991