Human SNP ID | rs9841504 |
---|---|
Human chromosome | chr3 |
Human SNP position | 114643917 |
Pig chromosome | chr13 |
Pig SNP position | 154885810 |
PubMed ID | 22037551 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22037551 |
Study | A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1. |
Disease/Trait | Gastric cancer |
Initial sample | 1,006 Han Chinese ancestry cases, 2,273 Han Chinese ancestry controls |
Replication sample | 3,288 Han Chinese ancestry cases, 3,609 Han Chinese ancestry controls |
Region | 3q13.31 |
Chromosome id | chr3 |
Chromosome position | 114643917 |
Reported gene | ZBTB20 |
Mapped gene | ZBTB20 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26137 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9841504-? |
SNPs | rs9841504 |
Merged | 0 |
SNP id current | 9841504 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.20-1.45] |
Platform | Affymetrix [555896] |
CNV | N |
Mapped trait | gastric carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000178 |
Study accession | GCST001300 |