SNP Detail For rs9841504
1.Mapping Information
Human SNP ID rs9841504
Human chromosome chr3
Human SNP position 114643917
Pig chromosome chr13
Pig SNP position 154885810
2.Annotation Information
PubMed ID22037551
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22037551
StudyA genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1.
Disease/TraitGastric cancer
Initial sample1,006 Han Chinese ancestry cases, 2,273 Han Chinese ancestry controls
Replication sample3,288 Han Chinese ancestry cases, 3,609 Han Chinese ancestry controls
Region3q13.31
Chromosome idchr3
Chromosome position114643917
Reported geneZBTB20
Mapped geneZBTB20
Upstream gene id
Downstream gene id
SNP gene ids26137
Upstream gene distance
Downstream gene distance
SNP risk allelers9841504-?
SNPsrs9841504
Merged0
SNP id current9841504
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.32
%95 Ci[1.20-1.45]
PlatformAffymetrix [555896]
CNVN
Mapped traitgastric carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000178
Study accessionGCST001300