SNP Detail For rs9835973
1.Mapping Information
Human SNP ID rs9835973
Human chromosome chr3
Human SNP position 133870480
Pig chromosome chr13
Pig SNP position 82552407
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-1beta)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region3q22.1
Chromosome idchr3
Chromosome position133870480
Reported geneRAB6B
Mapped geneRAB6B
Upstream gene id
Downstream gene id
SNP gene ids51560
Upstream gene distance
Downstream gene distance
SNP risk allelers9835973-A
SNPsrs9835973
Merged0
SNP id current9835973
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000007
Pvalue mlog7.15490195998574
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001533