SNP Detail For rs9835332
1.Mapping Information
Human SNP ID rs9835332
Human chromosome chr3
Human SNP position 56633654
Pig chromosome chr13
Pig SNP position 42350238
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region3p14.3
Chromosome idchr3
Chromosome position56633654
Reported geneC3orf63
Mapped geneFAM208A
Upstream gene id
Downstream gene id
SNP gene ids23272
Upstream gene distance
Downstream gene distance
SNP risk allelers9835332-C
SNPsrs9835332
Merged0
SNP id current9835332
Contextmissense_variant
Intergenic0
Allele frequency0.46
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text
Or beta0.026
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25282103
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25282103
StudyDefining the role of common variation in the genomic and biological architecture of adult human height.
Disease/TraitHeight
Initial sample253,288 European ancestry individuals
Replication sample80,067 European ancestry individuals
Region3p14.3
Chromosome idchr3
Chromosome position56633654
Reported geneC3orf63
Mapped geneFAM208A
Upstream gene id
Downstream gene id
SNP gene ids23272
Upstream gene distance
Downstream gene distance
SNP risk allelers9835332-C
SNPsrs9835332
Merged0
SNP id current9835332
Contextmissense_variant
Intergenic0
Allele frequency0.46
P value4E-22
Pvalue mlog21.397940008672
P value text
Or beta0.028
%95 Ci[0.022-0.034] unit decrease
PlatformAffymetrix, Illumina, Perlegen [2550858] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002647