SNP Detail For rs9832314
1.Mapping Information
Human SNP ID rs9832314
Human chromosome chr3
Human SNP position 72468889
Pig chromosome chr13
Pig SNP position 59518221
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region3p13
Chromosome idchr3
Chromosome position72468889
Reported geneNR
Mapped geneLOC105377160 - LOC105377648
Upstream gene id105377160
Downstream gene id105377648
SNP gene ids
Upstream gene distance5314
Downstream gene distance92285
SNP risk allelers9832314-G
SNPsrs9832314
Merged0
SNP id current9832314
Contextintergenic_variant
Intergenic1
Allele frequency0.055934898976413
P value0.000009
Pvalue mlog5.04575749056067
P value text(IGP66)
Or beta0.2992
%95 Ci[0.17-0.43] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848