Human SNP ID | rs9832314 |
---|---|
Human chromosome | chr3 |
Human SNP position | 72468889 |
Pig chromosome | chr13 |
Pig SNP position | 59518221 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 3p13 |
Chromosome id | chr3 |
Chromosome position | 72468889 |
Reported gene | NR |
Mapped gene | LOC105377160 - LOC105377648 |
Upstream gene id | 105377160 |
Downstream gene id | 105377648 |
SNP gene ids | |
Upstream gene distance | 5314 |
Downstream gene distance | 92285 |
SNP risk allele | rs9832314-G |
SNPs | rs9832314 |
Merged | 0 |
SNP id current | 9832314 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.055934898976413 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (IGP66) |
Or beta | 0.2992 |
%95 Ci | [0.17-0.43] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |