SNP Detail For rs9827908
1.Mapping Information
Human SNP ID rs9827908
Human chromosome chr3
Human SNP position 66395177
Pig chromosome chr13
Pig SNP position 52663688
2.Annotation Information
PubMed ID24554482
JournalJ Neurovirol
Linkwww.ncbi.nlm.nih.gov/pubmed/24554482
StudyGenome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.
Disease/TraitResponse to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)
Initial sample8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls
Replication sampleNA
Region3p14.1
Chromosome idchr3
Chromosome position66395177
Reported geneLRIG1
Mapped geneLRIG1
Upstream gene id
Downstream gene id
SNP gene ids26018
Upstream gene distance
Downstream gene distance
SNP risk allelers9827908-?
SNPsrs9827908
Merged0
SNP id current9827908
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000006
Pvalue mlog7.22184874961635
P value text(AA)
Or beta48.5
%95 Ci[NR]
PlatformIllumina [936149]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100
Study accessionGCST002363