Human SNP ID | rs9822268 |
---|---|
Human chromosome | chr3 |
Human SNP position | 49682296 |
Pig chromosome | chr13 |
Pig SNP position | 35392521 |
PubMed ID | 21297633 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21297633 |
Study | Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. |
Disease/Trait | Ulcerative colitis |
Initial sample | 6,687 European ancestry cases, 19,718 European ancestry controls |
Replication sample | 9,628 European ancestry cases, 12,917 European ancestry controls |
Region | 3p21.31 |
Chromosome id | chr3 |
Chromosome position | 49682296 |
Reported gene | UBA7, MST1, APEH, AMIGO3, GMPPB, BSN |
Mapped gene | APEH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 327 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9822268-A |
SNPs | rs9822268 |
Merged | 0 |
SNP id current | 9822268 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.3 |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | |
Or beta | 1.21 |
%95 Ci | [1.16-1.26] |
Platform | Affymetrix, Illumina [~ 1100000] (imputed) |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000964 |