SNP Detail For rs9822268
1.Mapping Information
Human SNP ID rs9822268
Human chromosome chr3
Human SNP position 49682296
Pig chromosome chr13
Pig SNP position 35392521
2.Annotation Information
PubMed ID21297633
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21297633
StudyMeta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
Disease/TraitUlcerative colitis
Initial sample6,687 European ancestry cases, 19,718 European ancestry controls
Replication sample9,628 European ancestry cases, 12,917 European ancestry controls
Region3p21.31
Chromosome idchr3
Chromosome position49682296
Reported geneUBA7, MST1, APEH, AMIGO3, GMPPB, BSN
Mapped geneAPEH
Upstream gene id
Downstream gene id
SNP gene ids327
Upstream gene distance
Downstream gene distance
SNP risk allelers9822268-A
SNPsrs9822268
Merged0
SNP id current9822268
Contextintron_variant
Intergenic0
Allele frequency0.3
P value0.00000000000000002
Pvalue mlog16.698970004336
P value text
Or beta1.21
%95 Ci[1.16-1.26]
PlatformAffymetrix, Illumina [~ 1100000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000964