SNP Detail For rs9821630
1.Mapping Information
Human SNP ID rs9821630
Human chromosome chr3
Human SNP position 16929446
Pig chromosome chr13
Pig SNP position 4312602
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region3p24.3
Chromosome idchr3
Chromosome position16929446
Reported genePLCL2
Mapped genePLCL2
Upstream gene id
Downstream gene id
SNP gene ids23228
Upstream gene distance
Downstream gene distance
SNP risk allelers9821630-G
SNPsrs9821630
Merged0
SNP id current9821630
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.08
%95 Ci[1.07-1.1]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198