SNP Detail For rs981782
1.Mapping Information
Human SNP ID rs981782
Human chromosome chr5
Human SNP position 45285616
Pig chromosome chr16
Pig SNP position 30977691
2.Annotation Information
PubMed ID17529967
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/17529967
StudyGenome-wide association study identifies novel breast cancer susceptibility loci.
Disease/TraitBreast cancer
Initial sample390 cases,364 controls
Replication sample26,646 cases,24,889 controls
Region5p12
Chromosome idchr5
Chromosome position45285616
Reported geneintergenic
Mapped geneHCN1
Upstream gene id
Downstream gene id
SNP gene ids348980
Upstream gene distance
Downstream gene distance
SNP risk allelers981782-C
SNPsrs981782
Merged0
SNP id current981782
Contextintron_variant
Intergenic0
Allele frequency0.53
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.04
%95 Ci[1.01-1.08]
PlatformPerlegen [205586]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST000035