Human SNP ID | rs981782 |
---|---|
Human chromosome | chr5 |
Human SNP position | 45285616 |
Pig chromosome | chr16 |
Pig SNP position | 30977691 |
PubMed ID | 17529967 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/17529967 |
Study | Genome-wide association study identifies novel breast cancer susceptibility loci. |
Disease/Trait | Breast cancer |
Initial sample | 390 cases,364 controls |
Replication sample | 26,646 cases,24,889 controls |
Region | 5p12 |
Chromosome id | chr5 |
Chromosome position | 45285616 |
Reported gene | intergenic |
Mapped gene | HCN1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 348980 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs981782-C |
SNPs | rs981782 |
Merged | 0 |
SNP id current | 981782 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.53 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 1.04 |
%95 Ci | [1.01-1.08] |
Platform | Perlegen [205586] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000035 |