SNP Detail For rs980952
1.Mapping Information
Human SNP ID rs980952
Human chromosome chr11
Human SNP position 41204404
Pig chromosome chr2
Pig SNP position 22535721
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region11p12
Chromosome idchr11
Chromosome position41204404
Reported geneNR
Mapped geneLRRC4C
Upstream gene id
Downstream gene id
SNP gene ids57689
Upstream gene distance
Downstream gene distance
SNP risk allelers980952-G
SNPsrs980952
Merged0
SNP id current980952
Contextintron_variant
Intergenic0
Allele frequency0.975374875668449
P value0.000005
Pvalue mlog5.30102999566398
P value text(IGP25)
Or beta0.4489
%95 Ci[0.26-0.64] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848