SNP Detail For rs9803659
1.Mapping Information
Human SNP ID rs9803659
Human chromosome chr1
Human SNP position 167187263
Pig chromosome chr4
Pig SNP position 91487319
2.Annotation Information
PubMed ID18940312
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18940312
StudyPopulation-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.
Disease/TraitLiver enzyme levels
Initial sample7,751 European ancestry individuals
Replication sample1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals
Region1q24.1
Chromosome idchr1
Chromosome position167187263
Reported genePOU2F1
Mapped geneLINC01363
Upstream gene id
Downstream gene id
SNP gene ids101928484
Upstream gene distance
Downstream gene distance
SNP risk allelers9803659-C
SNPsrs9803659
Merged0
SNP id current9803659
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(ALT)
Or beta0.03
%95 Ci[0.018-0.042] U/L decrease
PlatformAffymetrix, Illumina [up to 496032]
CNVN
Mapped traitliver enzyme measurement, serum alanine aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004582, http://www.ebi.ac.uk/efo/EFO_0004735
Study accessionGCST000248