Human SNP ID | rs9803659 |
---|---|
Human chromosome | chr1 |
Human SNP position | 167187263 |
Pig chromosome | chr4 |
Pig SNP position | 91487319 |
PubMed ID | 18940312 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18940312 |
Study | Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. |
Disease/Trait | Liver enzyme levels |
Initial sample | 7,751 European ancestry individuals |
Replication sample | 1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals |
Region | 1q24.1 |
Chromosome id | chr1 |
Chromosome position | 167187263 |
Reported gene | POU2F1 |
Mapped gene | LINC01363 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928484 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs9803659-C |
SNPs | rs9803659 |
Merged | 0 |
SNP id current | 9803659 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (ALT) |
Or beta | 0.03 |
%95 Ci | [0.018-0.042] U/L decrease |
Platform | Affymetrix, Illumina [up to 496032] |
CNV | N |
Mapped trait | liver enzyme measurement, serum alanine aminotransferase measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004582, http://www.ebi.ac.uk/efo/EFO_0004735 |
Study accession | GCST000248 |